PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_36324_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 409aa    MW: 44632 Da    PI: 6.5685
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_36324_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS193.11.8e-592113901181
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a+s+++ +  ++l+++ +  +s +g+p+qRl ay++e+L ar  +s+s++y+al+++e +   s++ l+++++++e++P+lkf++
  Neem_36324_f_1 211 LKQLLIACAKALSENNINDFDKLIEKARGAVSISGEPIQRLGAYMVEGLVARKEKSGSNIYRALRCREPE---SKDLLSYMHILYEICPYLKFGY 302
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                     ++aN aI ea ++e+r+HiiDf+i qG+QW++LlqaLa++p+gpp++RiTg+++p s+  + + le++g+rLa + +++++p+ef+++
  Neem_36324_f_1 303 MAANGAIAEACKNEDRIHIIDFQIAQGTQWMTLLQALAAKPSGPPHVRITGIDDPVSKyaRGDGLEAVGRRLAAISQKFNIPVEFHPV 390
                     *******************************************************999999*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.572185409IPR005202Transcription factor GRAS
PfamPF035146.2E-57211390IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MESHQIFGYS VAGAGISHSS SHPTVPSVPN RLFGSLKFDV GNSPNSPFST PFECDTITTL  60
SDSQEQHSST ENPSGLSPSC NSSLESNGYF HQLSPAADSL VLCSGWTSYL QNTNCSQKIK  120
HALQELETVL MGPDEDEEVT RRNTSGGESS MPQAPGQRSK AWNLERRGSH VIQPQPSLIS  180
RYRQSGEGAE IGNRQMTIEE SSWHSFPSGN LKQLLIACAK ALSENNINDF DKLIEKARGA  240
VSISGEPIQR LGAYMVEGLV ARKEKSGSNI YRALRCREPE SKDLLSYMHI LYEICPYLKF  300
GYMAANGAIA EACKNEDRIH IIDFQIAQGT QWMTLLQALA AKPSGPPHVR ITGIDDPVSK  360
YARGDGLEAV GRRLAAISQK FNIPVEFHPV PAWGGSGCEF PSATPPHPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-3021839025194Protein SCARECROW
5b3h_D8e-3021839025194Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4406476e-76JF440647.1 Citrus medica var. sarcodactylis GRAS family transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452128.10.0chitin-inducible gibberellin-responsive protein 1
RefseqXP_006475287.10.0chitin-inducible gibberellin-responsive protein 1-like
RefseqXP_024953185.10.0chitin-inducible gibberellin-responsive protein 1-like
TrEMBLV4TXN90.0V4TXN9_9ROSI; Uncharacterized protein
STRINGXP_006475287.10.0(Citrus sinensis)
STRINGXP_006452128.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.22e-82GRAS family protein