PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_36468_a_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 42aa MW: 4705.1 Da PI: 3.8835

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_36468_a_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	2e-07	11	41	3	30
SS-HHHHHHHHHHHHHTTTT...-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIart 30 WT+e d+ + +a + ++ + +W++Ia+ Neem_36468_a_1 11 VWTKEQDKAFENALATYPEDasdRWEKIAAD 41 7****************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.3E-7	10	40	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-5	11	41	IPR001005	SANT/Myb domain
CDD	cd00167	2.13E-4	12	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 42 aa Download sequence Send to blast
MTVDEVGSSS VWTKEQDKAF ENALATYPED ASDRWEKIAA DL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM464211	6e-41	AM464211.2 Vitis vinifera contig VV78X096187.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437648.1	2e-19	transcription factor SRM1
Refseq	XP_006437649.1	2e-19	transcription factor SRM1
Refseq	XP_006484484.1	2e-19	transcription factor SRM1
Refseq	XP_015387550.1	2e-19	transcription factor SRM1
Refseq	XP_015387551.1	2e-19	transcription factor SRM1
Refseq	XP_024041573.1	2e-19	transcription factor SRM1
Refseq	XP_024041574.1	2e-19	transcription factor SRM1
Refseq	XP_024041575.1	2e-19	transcription factor SRM1
Refseq	XP_024041576.1	2e-19	transcription factor SRM1
Refseq	XP_024956475.1	2e-19	transcription factor SRM1
TrEMBL	A0A2H5P3M4	3e-18	A0A2H5P3M4_CITUN; Uncharacterized protein (Fragment)
STRING	XP_006484484.1	7e-19	(Citrus sinensis)
STRING	XP_006437648.1	7e-19	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	4e-11	MYB family protein