PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_36512_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 201aa    MW: 22806.6 Da    PI: 6.15
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_36512_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.6e-111345134
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                     rg W++eEde+l+++++ +G g+W+++++    g
   Neem_36512_f_1 13 RGLWSPEEDEKLIKYITTHGHGSWSSVPKLAD-G 45
                     788*************************9887.5 PP
2Myb_DNA-binding53.55.5e-174992146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg++T++E+ +++d ++ lG++ W+ Ia++++ gRt++++k++w++
   Neem_36512_f_1 49 RGSFTEQEERIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 92
                     89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-14542IPR009057Homeodomain-like
SuperFamilySSF466891.6E-201090IPR009057Homeodomain-like
SMARTSM00717121247IPR001005SANT/Myb domain
PfamPF002492.7E-81343IPR001005SANT/Myb domain
PROSITE profilePS5129420.9264498IPR017930Myb domain
SMARTSM007175.4E-154896IPR001005SANT/Myb domain
PfamPF002491.8E-154992IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-214999IPR009057Homeodomain-like
CDDcd001673.07E-125191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGHNCCSKQK VKRGLWSPEE DEKLIKYITT HGHGSWSSVP KLADGLRLRG SFTEQEERII  60
IDIHRILGNR WAQIAKHLPG RTDNEVKNFW NSCVKKKLIA QGIDPNTHNL LASTQIISSN  120
NYGNNNAYEN NGIFNSGSFD EVLIEASPEK EEAMLQPKQQ QGVLNHDGQN MNQFDFDFLE  180
STVLPCGMYC NLSPIDQFAW D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2113987108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900539.11e-68transcription factor MYB26-like isoform X2
SwissprotQ8LPH61e-47MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A067GEZ23e-66A0A067GEZ2_CITSI; Uncharacterized protein
TrEMBLA0A2H5P9K73e-66A0A2H5P9K7_CITUN; Uncharacterized protein
TrEMBLV4W6S33e-66V4W6S3_9ROSI; Uncharacterized protein
STRINGXP_006468652.15e-67(Citrus sinensis)
STRINGXP_006448584.15e-67(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-62myb domain protein 67