PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3657_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 316aa    MW: 34060.7 Da    PI: 6.2368
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3657_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.5e-10228276553
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                    kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+
  Neem_3657_f_1 228 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQ 276
                    9*****************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.8E-16224288IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932226289IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.7E-11228281No hitNo description
SuperFamilySSF579597.74E-11228279No hitNo description
PfamPF001705.2E-9228276IPR004827Basic-leucine zipper domain
CDDcd147038.83E-27229278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDKDKSSSHG GGLPPPSGRF SSFSPPGNHN FNVKPEPSST SSFPPLMPGG SGSDGAHFGH  60
QSDGNRFSHD ISRMPDNPPK NVGHRRAHSE ILTLPDDISF DSDLGVVGGA DGPSFSDETE  120
EDLLSMYLDM DKFNSSTATS GFQMGEPSAA AVPAPPVATG VGNSMVENVG AGSAERPRIR  180
HQHSQSMDGS TSIKPEMLMA GSEESPATDS KKAISAAKLA ELALIDPKRA KRIWANRQSA  240
ARSKERKMRY IAELERKVQT LQTEATSLSA QLTLLQRDTN GLTAENSELK LRLQTMEQQV  300
HLQDDLMDRH TGNHNF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442989.10.0probable transcription factor PosF21
RefseqXP_006478733.10.0probable transcription factor PosF21
SwissprotQ040881e-131POF21_ARATH; Probable transcription factor PosF21
TrEMBLV4VSX80.0V4VSX8_9ROSI; Uncharacterized protein
STRINGXP_006478733.10.0(Citrus sinensis)
STRINGXP_006442989.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-142bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]