PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3666_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 177aa MW: 20039.4 Da PI: 6.6771

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3666_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.1	1.2e-19	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl Neem_3666_f_1 17 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 64 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.074	12	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-23	13	67	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-17	16	66	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-18	17	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.77E-24	18	93	IPR009057	Homeodomain-like
CDD	cd00167	1.73E-13	19	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-7	68	91	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAGSQMGWGI IDEGWRKGPW TAEEDRLLIE YVRLHGEGRW NSVARLAGLR RNGKSCRLRW 60 VNYLRPDLKR GQITPHEESI ILELHARWGN RAPYIPQAPR QETIANTVYP HTSEDQQAFF 120 YNSTGNSNNA IVTEPSNEEI LWDGLWNLDD FQGNFGGAAA TYATGKASLH NLVAPFC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-15	17	91	27	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM474331	3e-40	AM474331.1 Vitis vinifera contig VV79X001023.3, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006420401.2	8e-59	transcription factor MYB2
Refseq	XP_006480263.1	6e-59	transcription factor MYB2
TrEMBL	A0A0A0LIF8	3e-58	A0A0A0LIF8_CUCSA; Uncharacterized protein
TrEMBL	A0A2H5P2I9	2e-57	A0A2H5P2I9_CITUN; Uncharacterized protein
TrEMBL	V4S9P5	1e-57	V4S9P5_9ROSI; Uncharacterized protein
STRING	XP_006480263.1	2e-58	(Citrus sinensis)
STRING	XP_006420401.1	2e-58	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	8e-52	myb domain protein 305