PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_36731_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 143aa    MW: 16961.3 Da    PI: 10.5544
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_36731_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.31.2e-16854551
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51
                    +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN++L+k+ + 
  Neem_36731_f_1  8 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKKL 54
                    79****************************************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.5E-10460IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.817655IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-14855No hitNo description
PfamPF001707.3E-14853IPR004827Basic-leucine zipper domain
CDDcd147072.16E-21862No hitNo description
SuperFamilySSF579599.38E-12855No hitNo description
PROSITE patternPS0003601126IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MIERTVERRQ KRMIKNRESA ARSRARKQAY TNELENKVSR LEEENERLRK RKKLLFFSQA  60
CPHFVPSPFY LSRTISDYLE NLVWHKHSSY IPSSSFSVNP IHPAPSDSVF MSWRRCCHLL  120
HHRSQDISFA EQHQPHSNLV SVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753LRKRKKL
24852RKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4697083e-33AM469708.2 Vitis vinifera contig VV78X277820.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600989.12e-27ABSCISIC ACID-INSENSITIVE 5-like protein 2
RefseqXP_021600990.12e-27ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A251IQ684e-26A0A251IQ68_MANES; Uncharacterized protein
STRINGcassava4.1_011841m6e-27(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.13e-16ABA-responsive element binding protein 3