PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_36966_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 237aa MW: 27429.5 Da PI: 7.3033

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_36966_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.7e-27	73	159	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YAk +GFsvrk+ ++sk +g++++r+++Cs+eg+r++++++ ++ +++r+etrtgC a++ ++++ dgk++vt++e +HnH+ Neem_36966_f_1 73 RFYNRYAKLLGFSVRKDWANRSKIHGQVVSRKYTCSREGHRRKDRRD-TNVKKHRKETRTGCLAHMIITRQPDGKYRVTHFEANHNHD 159 5*****************************************999.99999********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-24	73	159	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MNKDDSDLGS PHDMIMDNRF QTSNELDLNV EQGSRSPIVV NATLSTLSSK DDANVDGILR 60 IGTEFESDEH AYRFYNRYAK LLGFSVRKDW ANRSKIHGQV VSRKYTCSRE GHRRKDRRDT 120 NVKKHRKETR TGCLAHMIIT RQPDGKYRVT HFEANHNHDN IDPNNAQTFL LQKELFVDQA 180 PEIGLPNNLE LQSNTDSDLM SRRFEVRDAL DFLAIDYDIS LRSERVRNMK EDAPKCS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445005.1	1e-124	protein FAR1-RELATED SEQUENCE 12 isoform X3
Refseq	XP_006491138.1	1e-124	protein FAR1-RELATED SEQUENCE 12-like isoform X2
Refseq	XP_015389745.1	1e-123	protein FAR1-RELATED SEQUENCE 12-like isoform X1
Refseq	XP_024044652.1	1e-123	protein FAR1-RELATED SEQUENCE 12 isoform X1
Refseq	XP_024044654.1	1e-123	protein FAR1-RELATED SEQUENCE 12 isoform X2
TrEMBL	V4U2J1	1e-123	V4U2J1_9ROSI; Uncharacterized protein
STRING	XP_006491138.1	1e-123	(Citrus sinensis)
STRING	XP_006445005.1	1e-123	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-21	FAR1 family protein