PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_37243_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 196aa    MW: 21086.8 Da    PI: 7.2604
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_37243_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.9e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +v+++G+g Wk I r          R+  ++k++w++
   Neem_37243_f_1  5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEfnpflFSRSNIDLKDKWRN 55
                     79*******************************9**989**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.378161IPR017930Myb domain
SuperFamilySSF466891.15E-16258IPR009057Homeodomain-like
SMARTSM007175.2E-9459IPR001005SANT/Myb domain
PfamPF002491.6E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-15556IPR009057Homeodomain-like
CDDcd116602.40E-22656No hitNo description
SMARTSM005260.0013124188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.6E-7125167IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150413.503126196IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.99E-8127173IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.6E-6128162IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQRDPEFNPF LFSRSNIDLK DKWRNMSVSA  60
GGNGPREKSR TPKPKGGSDA PAVPLSTPQT SALPAAVAND ASTDPIVDDS ARSSAPNDFV  120
IFKISQSPRY NELIFEALAA LKEPNGSDVS AILNYIETVC PTTIAATAIE KLLVLENFTA  180
NGLCLGGQYS LRAMPL
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451517.18e-83single myb histone 4
RefseqXP_006475491.18e-83single myb histone 4-like
SwissprotF4I7L12e-41TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLV4TW202e-81V4TW20_9ROSI; Uncharacterized protein
STRINGXP_006475491.13e-82(Citrus sinensis)
STRINGXP_006451517.13e-82(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-44MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]