PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_37391_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 127aa    MW: 13926.7 Da    PI: 6.4925
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_37391_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-125076127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  Neem_37391_f_1 50 PGEPDCSYYIRTGLCRFGATCRFNHPP 76
                    5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874977IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-95176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-65477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-45575IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MEFEAGIPMS RGAAVTEGPS LSPSLNQDAL WQMNLRANEA MESGSLPERP GEPDCSYYIR  60
TGLCRFGATC RFNHPPNRKL AIATARIKGE YPERVGQQEC QACNLSSSSV NDSVTILVYV  120
GSLHQKY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480413.12e-62zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024037223.12e-62zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_024955986.12e-62zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024955987.12e-62zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ8GXX78e-46C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A2H5PCS73e-66A0A2H5PCS7_CITUN; Uncharacterized protein
STRINGXP_006480413.17e-62(Citrus sinensis)
STRINGXP_006428579.17e-62(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2124855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-48zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]