PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_37590_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 133aa    MW: 15191.7 Da    PI: 10.5811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_37590_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.1e-105793341
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      W++ E +++++a + +G++ Wk++a+ +  +R+++++ 
   Neem_37590_f_1 57 QWSKGELQRFYEAYRNYGKD-WKKVAAQVR-NRSAEMVE 93
                     6*****************99.*********.****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.01253106IPR017884SANT domain
SMARTSM007170.002554102IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-1154102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-65797IPR009057Homeodomain-like
PfamPF002496.2E-95797IPR001005SANT/Myb domain
CDDcd001671.05E-55899No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MAPTRKSRSV NKRYSNEVSP GKDMVNSSKA KQKLCFNMLT MKFSSLKKKL SDKLGPQWSK  60
GELQRFYEAY RNYGKDWKKV AAQVRNRSAE MVEALYNMNR AYLSLPEGTA SVVGLIAMMT  120
DHYNVLVRLD IGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898881.11e-57protein ALWAYS EARLY 2
SwissprotQ6A3314e-47ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBLA0A2K3NNN31e-56A0A2K3NNN3_TRIPR; Always early 2-like protein
STRINGevm.model.supercontig_48.705e-57(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2125155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.27e-38DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]