PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_37611_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 241aa    MW: 26600.6 Da    PI: 5.0149
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_37611_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19103153255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k  r++lg+f ta eAa+a+++a+ kl+g
  Neem_37611_f_1 103 HYRGVRRRP-WGKYAAEIRDP---NrKGIRVWLGTFETAIEAARAYDHAAFKLRG 153
                     8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-30102161No hitNo description
Gene3DG3DSA:3.30.730.102.8E-32102162IPR001471AP2/ERF domain
SMARTSM003806.4E-38103167IPR001471AP2/ERF domain
PfamPF008478.5E-13103153IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-23103163IPR016177DNA-binding domain
PROSITE profilePS5103224.816103161IPR001471AP2/ERF domain
PRINTSPR003672.3E-10104115IPR001471AP2/ERF domain
PRINTSPR003672.3E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MATPEEASTL ELISQFLLTD FASMDNFISS LNLYTSHNTN FDKATADISV SDYLNEPELN  60
QTDQSSSQSK SLSTLSTIPA AADFDLSSNV NPVKGLDAGK EKHYRGVRRR PWGKYAAEIR  120
DPNRKGIRVW LGTFETAIEA ARAYDHAAFK LRGRKAILNF PLEVGNSNSA ESESQVNFGK  180
RRKYEEADTV ERKAVKEAPE ETVTETVTPA GVGQLTPSSW TGFWDDVKGM FTVPPLSPIL  240
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-29100171270ATERF1
3gcc_A4e-29100171270ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286001.12e-72ethylene-responsive transcription factor ERF105-like
TrEMBLA0A067D6A57e-69A0A067D6A5_CITSI; Uncharacterized protein
STRINGXP_006490015.11e-69(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.17e-57ethylene response factor 104