PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3816_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 809aa    MW: 92221.3 Da    PI: 8.3212
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3816_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4163.4e-1271765461374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l+++L+ cA+avs++d + a  l+  l++++s +gdpmqRl ay++e+L+arl  s+s++ykal++++ +   sse +++++++++++P+ kf+++
  Neem_3816_f_1 176 LKQVLIFCAQAVSHSDISTAAGLMHVLEQMVSVSGDPMQRLGAYMLEGLRARLEFSGSKIYKALKCEQPT---SSELMSYMHILYHICPYWKFAYM 268
                    5799*****************************************************************9...99********************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN  I eave+e+++HiiDf+i qG+QW+ Llq+La+Rp+gpp +RiTg+++++s   +   l+ +g++L+k+A++++vpfef+  +a +  +++
  Neem_3816_f_1 269 SANVVIGEAVENERMIHIIDFQIAQGTQWMFLLQTLAKRPGGPPFVRITGIDDSQSIhaRGGGLHIVGQKLSKVAASCNVPFEFHD-AAMTGCEVQ 363
                    *****************************************************9988889999***********************.8999***** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+Lr+ pgEa++Vn+ + lh+++desvs+ ++rd++L+lvkslsPkvv++veqe+++n+++F++rfle+l+yy+a+f+++++  pre+++ri+ E
  Neem_3816_f_1 364 REHLRILPGEAVVVNFPYVLHHMPDESVSTVNHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFECIDVACPREDKKRISAE 459
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++++r+ivn++acegaer+erhe l+kWr+r+++a F+p++ls ++++ +  +l++++s+ yrv e++g+l+l Wk+r++ + SaWr
  Neem_3816_f_1 460 QHCVARDIVNMIACEGAERVERHELLGKWRSRFMMARFTPYQLSPSVTTAVYDVLKEYNSN-YRVAEHDGALYLSWKNRAMATSSAWR 546
                    ***********************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.776150527IPR005202Transcription factor GRAS
PfamPF035141.2E-124176546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MQTSQKNQGA ANIHRMYQQP VQGIEPYCFS HIEILDNNMC SDVGSQGTSV SFQTYKEQFY  60
TLESSSATTG FTYDSPSAVS ISSNRSPFSP QGSQSWLSDP HHSPDNAYGS PMSGSSVVDD  120
GSELRNKLRE LEISLLGPES DIIDSGSCCF KSGMHQETSV SWNWDELMEM IPRLDLKQVL  180
IFCAQAVSHS DISTAAGLMH VLEQMVSVSG DPMQRLGAYM LEGLRARLEF SGSKIYKALK  240
CEQPTSSELM SYMHILYHIC PYWKFAYMSA NVVIGEAVEN ERMIHIIDFQ IAQGTQWMFL  300
LQTLAKRPGG PPFVRITGID DSQSIHARGG GLHIVGQKLS KVAASCNVPF EFHDAAMTGC  360
EVQREHLRIL PGEAVVVNFP YVLHHMPDES VSTVNHRDRL LRLVKSLSPK VVTLVEQESK  420
TNTSPFFHRF LETLDYYTAM FECIDVACPR EDKKRISAEQ HCVARDIVNM IACEGAERVE  480
RHELLGKWRS RFMMARFTPY QLSPSVTTAV YDVLKEYNSN YRVAEHDGAL YLSWKNRAMA  540
TSSAWRSNDV VLRTTNDVVF SQTTGYVSKS PDRSNYSDTL VHQIRIWQNF AAKTNLKLRI  600
SGRRMGMNME DVDRSDLRKL QKEQERERRR LRDRQRRQSM SVEEREKHLA RRRRNYQLRR  660
LRAENSKLDS EQSQSEQITH QILALPSASS DFDVDVGSHQ VGTKFESLEV PPHKLAKFSG  720
QLRLNHLKHL ARSMNDSAGD NHRVAVDVIK GNDASGYLSQ IAQVQTGRHC KIRETERRVD  780
DVRRGERPSD PYWRRALLIL KNFWNRSRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5218354526378Protein SCARECROW
5b3h_A2e-5218354525377Protein SCARECROW
5b3h_D2e-5218354525377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1625635RERRRLRDRQR
2627634RRRLRDRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449893.10.0scarecrow-like protein 13
RefseqXP_006467309.10.0scarecrow-like protein 13
RefseqXP_006475190.10.0scarecrow-like protein 13
RefseqXP_024047696.10.0scarecrow-like protein 13
RefseqXP_024950549.10.0scarecrow-like protein 13
RefseqXP_024953100.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A067GT350.0A0A067GT35_CITSI; Uncharacterized protein
TrEMBLA0A2H5N5780.0A0A2H5N578_CITUN; Uncharacterized protein
TrEMBLV4WA260.0V4WA26_9ROSI; Uncharacterized protein
STRINGXP_006467309.10.0(Citrus sinensis)
STRINGXP_006475190.10.0(Citrus sinensis)
STRINGXP_006449893.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13