PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3828_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 196aa MW: 21603.7 Da PI: 9.2548

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3828_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.6	1.6e-41	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slv+eA+ r+rdPvyG++g i++lqqq+++l+ael++ Neem_3828_f_1 46 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESHRADAANSLVFEANLRLRDPVYGCMGAISALQQQIQSLQAELNA 141 7*********************************************************************************************** PP DUF260 97 lkee 100 +k+e Neem_3828_f_1 142 VKSE 145 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.501	45	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-41	46	143	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MFRDRERFDD EIEKRIKGES DVSNSQMGRR HMLGPSVGST LNTITPCAAC KLLRRRCAEE 60 CPFSPYFSPH EPHKFAAVHK VFGASNVSKM LMEVPESHRA DAANSLVFEA NLRLRDPVYG 120 CMGAISALQQ QIQSLQAELN AVKSEILRYK YREATANTII SSSSNGLISS AVVSLAASSS 180 SPSLSIPPPK INKKQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-44	39	153	4	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-44	39	153	4	118	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023925198.1	3e-96	LOB domain-containing protein 15
Swissprot	Q9AT61	4e-78	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2C9V3A6	2e-93	A0A2C9V3A6_MANES; Uncharacterized protein
STRING	cassava4.1_029925m	3e-94	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-74	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]