PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3830_f_6

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 714aa MW: 81219.8 Da PI: 6.4187

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3830_f_6	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	270	7.4e-83	225	579	1	357
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPilk 92 lv+lLl++Ae + +++e+a++lL+r + +a+++++p+qR+++yf+ AL++r++r +++ ++k l+++ + ++ + l + + ++ P+ + Neem_3830_f_6 225 LVHLLLAAAEKLGYQQFERASRLLSRCEWIAAERANPVQRIVFYFAAALRERINReTGTMTSKELESTGMNLADHRNGLGSNPIfltCYQRLPFSQ 320 68***************************************************6677778888888777777666666665533368999 PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 + +lt qaI e v +++++H iDf+i G+QW +++qaLa+R+ ++ l iT+v+ +ke++eetg+ La+fAe+l++pf+f+v++ + l Neem_3830_f_6 321 VMYLTGIQAIIENVGNANKIHLIDFEIRSGVQWTSFMQALAERRqRPIQLLNITAVAF---RDKEKVEETGKSLASFAESLNLPFQFKVVYITCLL 413 *************************************9983555699**9...68***************************** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++ + +++k +E+l+V +++ l + +++ +le+ +L ++++l+P ++vv+e ea+hns+sF++rf+eal yysalfdsl++ +e+r+ Neem_3830_f_6 414 EIKEQLFEIKDDETLVVYCSFILRIMISHPSCLEN----LLGVIRKLNPSLMVVIEVEANHNSPSFVNRFIEALFYYSALFDSLDTCWDDCTETRT 505 *****************99999988888888....********************************************999999999 PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357 ++E+ + i+n+va+egaer r+ ++ Wr+ +++ + ++ ls++ qa+l+l++++ ++e++ +s Neem_3830_f_6 506 MMEAI-FDAGIRNIVAMEGAERSVRNVKMDVWRAFFSRYRMVEIGLSDQCLYQANLVLKQFScASSCTLEKNGKS 579 99999.*****************************************************98777888877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.679	199	575	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-80	225	579	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MANTLFSFTS FDFNGIQGRY STLLGDYHKE EVVLLEEKQA QMFSIEELGE VNPDLCPEFG 60 AYQEQEENIA KKGPHLLEEQ RQLLQHQNKL PNHDLLLNEL HPNFALSTTQ SFQEMPKLKS 120 VPASTQEVLK PVKEIPQPFA LSSLELLSNY ASGSRKLKTN LPTHMSNESN AGSSKKLSTE 180 EIMRVAGARY VHFSDHSYDD FSMVMHPFGY ALWGLSEEET RDVELVHLLL AAAEKLGYQQ 240 FERASRLLSR CEWIAAERAN PVQRIVFYFA AALRERINRE TGTMTSKELE STGMNLADHR 300 NGLGSNPIFL TCYQRLPFSQ VMYLTGIQAI IENVGNANKI HLIDFEIRSG VQWTSFMQAL 360 AERRQRPIQL LNITAVAFRD KEKVEETGKS LASFAESLNL PFQFKVVYIT CLLEIKEQLF 420 EIKDDETLVV YCSFILRIMI SHPSCLENLL GVIRKLNPSL MVVIEVEANH NSPSFVNRFI 480 EALFYYSALF DSLDTCWDDC TETRTMMEAI FDAGIRNIVA MEGAERSVRN VKMDVWRAFF 540 SRYRMVEIGL SDQCLYQANL VLKQFSCASS CTLEKNGKSL KSHGEQSNDG LGNLTYKLNQ 600 LKKQIQAERV VSIKEKIDKN RKKIESDVSK LLSTTSRKNV TFTKENGFGN MPLCKYSGFP 660 QGFGDKDYVN SHEVVLSTSG KLSCVEKIPP YTTWIFLDKY DRFSVYLPSI SGAT

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MANTLFSFTS FDFNGIQGRY STLLGDYHKE EVVLLEEKQA QMFSIEELGE VNPDLCPEFG  60
AYQEQEENIA KKGPHLLEEQ RQLLQHQNKL PNHDLLLNEL HPNFALSTTQ SFQEMPKLKS  120
VPASTQEVLK PVKEIPQPFA LSSLELLSNY ASGSRKLKTN LPTHMSNESN AGSSKKLSTE  180
EIMRVAGARY VHFSDHSYDD FSMVMHPFGY ALWGLSEEET RDVELVHLLL AAAEKLGYQQ  240
FERASRLLSR CEWIAAERAN PVQRIVFYFA AALRERINRE TGTMTSKELE STGMNLADHR  300
NGLGSNPIFL TCYQRLPFSQ VMYLTGIQAI IENVGNANKI HLIDFEIRSG VQWTSFMQAL  360
AERRQRPIQL LNITAVAFRD KEKVEETGKS LASFAESLNL PFQFKVVYIT CLLEIKEQLF  420
EIKDDETLVV YCSFILRIMI SHPSCLENLL GVIRKLNPSL MVVIEVEANH NSPSFVNRFI  480
EALFYYSALF DSLDTCWDDC TETRTMMEAI FDAGIRNIVA MEGAERSVRN VKMDVWRAFF  540
SRYRMVEIGL SDQCLYQANL VLKQFSCASS CTLEKNGKSL KSHGEQSNDG LGNLTYKLNQ  600
LKKQIQAERV VSIKEKIDKN RKKIESDVSK LLSTTSRKNV TFTKENGFGN MPLCKYSGFP  660
QGFGDKDYVN SHEVVLSTSG KLSCVEKIPP YTTWIFLDKY DRFSVYLPSI SGAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-31	255	565	33	343	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492448.1	0.0	DELLA protein RGL2-like
TrEMBL	A0A067H540	0.0	A0A067H540_CITSI; Uncharacterized protein
STRING	XP_006492448.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16533	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	5e-49	RGA-like 2