PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3861_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YC
Protein Properties Length: 142aa    MW: 16198.7 Da    PI: 10.129
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3861_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC50.25.7e-166941198
          NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                   e++++  + ++P  rikki+k d+d++++++ea  ++s++ elf+  ++ +s   a e+k++t+k   +  av+r   + dfl+d  p 
  Neem_3861_f_2  6 EQDAEAIRPQFPTGRIKKIMKLDKDINKVTSEALFVVSRSTELFLRFIAEKSAEVAIEKKKKTIKFDHLRVAVKRHRpTSDFLLDSLPA 94
                   6777777899***************************************************************9975389*****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.14E-19893IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.2E-201179IPR009072Histone-fold
PfamPF008085.2E-191578IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAEAEEQDAE AIRPQFPTGR IKKIMKLDKD INKVTSEALF VVSRSTELFL RFIAEKSAEV  60
AIEKKKKTIK FDHLRVAVKR HRPTSDFLLD SLPAPTESLD RRATESTISR PVVEKPLPVG  120
TRRIYDFFHK PANEAPVLIN ND
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438038.13e-71nuclear transcription factor Y subunit C-6
TrEMBLV4STV96e-70V4STV9_9ROSI; Uncharacterized protein
STRINGXP_006438038.11e-70(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.16e-49nuclear factor Y, subunit C13