PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3863_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 339aa MW: 37651 Da PI: 6.5792

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3863_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	179	226	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k a +L + +++++sLq Neem_3863_f_1 179 SHSLAERARREKINKRMKLLQDLVPGC----NKISGTALVLDEIINHVQSLQ 226 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-15	173	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-8	173	230	No hit	No description
PROSITE profile	PS50888	14.627	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-15	175	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	179	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-8	181	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
METTAPRSSV IGPSLDQNNL DSLQFNEEIQ HLMTVPPENA NSFTALLELS APQAVELLHH 60 STESNANAAA NLTVTVDGHQ TPYHFNAGAN LTFHSNIALI ERAAGFSVFA DSNDNPNSSQ 120 RLDIKSENQN QKSAKRKERE KKAKTAAKKS KSGANDSSED AEKLPYVHVR ARRGQATDSH 180 SLAERARREK INKRMKLLQD LVPGCNKISG TALVLDEIIN HVQSLQRQVE LLSMRLAAVN 240 PRIDFNLDSI LAAELQSGSF MEGNFPGMAM PVMWPEVQVN GNRQHYQPQW HYDGHQQLVS 300 LWGREEESRN LVTPENSLLS YDSSATSATL HPNQLKMEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007028901.2	1e-141	PREDICTED: transcription factor bHLH48 isoform X1
Swissprot	Q3EAI1	2e-87	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A061EXK6	1e-140	A0A061EXK6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRING	EOY09403	1e-140	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-91	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]