PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_38851_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 178aa    MW: 20355.3 Da    PI: 8.444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_38851_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.000114223654
                    S-STCHHHHHHHHHHHHHH CS
             HLH 36 kKlsKaeiLekAveYIksL 54
                    +K++Ka+++  A+eYIk+L
  Neem_38851_f_1  4 TKNDKASVVGDAIEYIKEL 22
                    89***************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MYTTKNDKAS VVGDAIEYIK ELLRTINDLK LLVEKKRCAR ERRKRHKTEE DEGCNIKPFV  60
DPDQPYNPSL RSSWLQRKSK DTEVDVRIIN DEVTIKLFQR KKIDCLLFVS KVLEELQLDL  120
RHVAGGHIGD HYSFLFNAKI YEGSSVYAGA VANKLIEVMD KQYAAVPQPS AVAISSNE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042786.12e-94transcription factor bHLH91 isoform X2
RefseqXP_024042787.12e-94transcription factor bHLH91 isoform X2
RefseqXP_024949273.12e-94transcription factor bHLH91-like isoform X1
RefseqXP_024949278.12e-94transcription factor bHLH91-like isoform X2
RefseqXP_024949279.12e-94transcription factor bHLH91-like isoform X1
RefseqXP_024949282.12e-94transcription factor bHLH91-like isoform X1
SwissprotQ84TK13e-61BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A2H5Q0393e-93A0A2H5Q039_CITUN; Uncharacterized protein
STRINGXP_006464331.16e-94(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]