PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3903_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 169aa    MW: 19320.8 Da    PI: 9.6416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3903_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-193282155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++y+GVr++  +g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a  +l+g
  Neem_3903_f_2 32 PKYRGVRRRQ-WGKWVSEIREPRK---KTRIWLGSFETPEMAARAYDVASYCLKG 82
                   79*****887.**********843...6**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-133282IPR001471AP2/ERF domain
CDDcd000181.37E-303291No hitNo description
SuperFamilySSF541713.53E-223391IPR016177DNA-binding domain
PROSITE profilePS5103224.0263390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-313391IPR001471AP2/ERF domain
SMARTSM003807.1E-353396IPR001471AP2/ERF domain
PRINTSPR003671.3E-103445IPR001471AP2/ERF domain
PRINTSPR003671.3E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKRKGYNDYN YSMSMRSSER VMQQRNKTAR HPKYRGVRRR QWGKWVSEIR EPRKKTRIWL  60
GSFETPEMAA RAYDVASYCL KGNKGLLNFP EEIDQLPRPR TSTANDIRAA AVAAAATPAT  120
NLKASTEFKE LSSNGGDDFW SEIELPELNF DAGNWTCCGD NIMWVDAAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-212594676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494833.17e-56ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI24e-48ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1S2XW412e-54A0A1S2XW41_CICAR; ethylene-responsive transcription factor ERF023-like
STRINGXP_004494833.13e-55(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-46ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]