PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_39244_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 104aa    MW: 11535.3 Da    PI: 5.6684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_39244_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000273322255
                    HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     L++l+P +    +k   Ka +L + ++YI+sLq
  Neem_39244_f_1  3 ILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 32
                    699999999....6669****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.864131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-11249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-10249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MKILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNSRMS LTPTIEGFHP  60
KDLGAQSFDA TGMMFGAQTA REFAQGSQTE WLHMQVGGSF ERAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476705.12e-67transcription factor bHLH79
SwissprotQ84T082e-46BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A067G3202e-67A0A067G320_CITSI; Uncharacterized protein
STRINGXP_006476705.18e-67(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.16e-50BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]