PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_392_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 466aa    MW: 51733.4 Da    PI: 6.3865
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_392_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-17156205155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Neem_392_f_1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 205
                   78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.06E-12156212No hitNo description
PfamPF008475.6E-9156205IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-15156214IPR016177DNA-binding domain
PROSITE profilePS5103217.411157213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16157213IPR001471AP2/ERF domain
SMARTSM003801.9E-30157219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MLDLNLSVAS VDHSGFNDKF LELSNYPMES SGSFNSSVIN ADTAGDCSPS SSDNVTAPCY  60
IFSILKDCSN NESSQTVNDR QEENIRGKTI QFFPMNSGGY DEGQPSASQI NEGLDLTCQS  120
ADYCCSVPGQ QMIAPEIQRR QTTAKKSRRG PRSKSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAL AAARAYDRAA IKFRGVDADI NFHINDYRED IKNVGWRLEV STFILGCITA  240
RRKPQDVNSP SPCYVWEIRA YDRAVLKCIG REALTNFDPK IYEGETNSDT NFPAEGNNYI  300
DLSLGIAPPH SSDGPMEDNF RGHHFQNGWN DMETRIQSSV PIVGRVQAQP LYEPAMAASE  360
HPNPPLWGGA CSNSFPYFKE RALEKRNMNS FPSWTWQYEA PIDVGSAAVP RFSTAASSGF  420
PSMATATASS TAAANHHHLH CPNLMLHNHY TPSVMSPNIT HFCCRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428895.11e-116floral homeotic protein APETALA 2 isoform X2
TrEMBLV4ST531e-114V4ST53_9ROSI; Uncharacterized protein
STRINGXP_006428894.11e-115(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2288634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-45related to AP2.7