PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_39610_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 223aa    MW: 25618.6 Da    PI: 6.7872
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_39610_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.71e-14657249
             NAM  2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk 49
                    ppGfrF Pt+eelv++yL++k+eg +      ++++i+ v+iy+++PwdLp+
  Neem_39610_f_1  6 PPGFRFYPTEEELVSFYLRNKLEGGRedlnRLMDRIIPVVNIYDYNPWDLPR 57
                    9************************966532233479*************94 PP
2NAM37.19.3e-12639793128
             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s ++++vg k+t+vfy+grap+g+kt+W m+ey++
  Neem_39610_f_1  63 YS-SNRAVGEKRTMVFYRGRAPNGTKTEWKMNEYKV 97 
                     34.7889***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.4721125IPR003441NAC domain
SuperFamilySSF1019413.27E-324125IPR003441NAC domain
PfamPF023653.4E-12696IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAEEYPPGFR FYPTEEELVS FYLRNKLEGG REDLNRLMDR IIPVVNIYDY NPWDLPRCPG  60
IVYSSNRAVG EKRTMVFYRG RAPNGTKTEW KMNEYKVIEG EAPTSTSSAP PVVRSEFSLC  120
RVYKKSKCLR SFDRRPPPGV IISDPRAQRL THHSDDHLHH QAATSCDRQT PQRTAAERTS  180
SRESSSSGDG HGGQPAQTGE NSNIFMTLDN EPWWDWDQLD FLM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022766085.14e-73NAC domain-containing protein 90-like
TrEMBLA0A061EV899e-71A0A061EV89_THECC; NAC domain containing protein 90
STRINGEOY083322e-71(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.18e-39NAC domain containing protein 90