PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3961_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 189aa    MW: 21367.6 Da    PI: 9.1524
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3961_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.63.9e-19132168135
           GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C+  nC+t +Tp+WRrgp g+ktLCnaCG++yrk+++
  Neem_3961_f_4 132 CTnyNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE 168
                    55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-12128180IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-14130178IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-16132168IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-13135178No hitNo description
CDDcd002021.02E-9136163No hitNo description
PROSITE profilePS5011412.044136182IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MLNEGMNFDA KEIPSNFGSQ FMHPQYNYQQ PSTINNINGS SYGGFNPFSS SSNNPCYHPH  60
RYNYNNNSNL NMNMNPNANL LPPPGAVMND YTLLDIPSRR ADRELGIGSS SHRKVGMRRQ  120
RGGGFIDPFK RCTNYNCNTN DTPMWRRGPL GPKTLCNACG IKYRKEEEKR KAKEAEKSNS  180
QEDSDNQSA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445921.21e-34GATA zinc finger domain-containing protein 12
RefseqXP_022728763.11e-35GATA transcription factor 29-like
TrEMBLA0A2H5PC721e-34A0A2H5PC72_CITUN; Uncharacterized protein
STRINGXP_006492723.19e-33(Citrus sinensis)
STRINGXP_006445921.18e-34(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.17e-19GATA transcription factor 29