PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_39691_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 227aa MW: 24625.2 Da PI: 7.0291

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_39691_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	43.1	7.2e-14	51	76	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ Cr+f+ tGtCkyG+ CkF+H++ Neem_39691_f_1 51 DQPDCRYFMNTGTCKYGADCKFHHPK 76 6899********************96 PP
2	zf-CCCH	18.1	4.8e-06	96	114	1	19
--S---SGGGGTS--TTTT CS zf-CCCH 1 yktelCrffartGtCkyGd 19 +++++C++++ +G+Ck+G+ Neem_39691_f_1 96 PGQAICSNYSMYGICKFGP 114 5789**************5 PP
3	zf-CCCH	31.8	2.4e-10	114	135	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++ +G+Ck+G++C+F H+ Neem_39691_f_1 114 PCSNYSMYGICKFGPTCRFDHP 135 7********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.5E-6	49	76	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.549	49	77	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-11	51	76	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-7	53	78	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-6	55	76	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.803	95	113	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-4	111	136	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-5	112	137	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-7	114	135	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.361	114	137	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
METEGNIGPV SPSSIAGSNL IYSSRNPSDL STGGQVHMLA TSSPNLPERP DQPDCRYFMN 60 TGTCKYGADC KFHHPKERIA QSAASNVGPL GLPSRPGQAI CSNYSMYGIC KFGPCSNYSM 120 YGICKFGPTC RFDHPYAGYP FNYGLSLPPL SILDSPLMTH QAVPTTHSSD RSPIMSSKIP 180 NWVQNSDAES MKHQNTTTKN SDNSSEVDHS PTQSVQNSSD HSHNQSN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447662.1	1e-111	zinc finger CCCH domain-containing protein 3
Refseq	XP_006469597.1	1e-111	zinc finger CCCH domain-containing protein 3
TrEMBL	A0A067EWN2	1e-111	A0A067EWN2_CITSI; Uncharacterized protein
STRING	XP_006469597.1	1e-110	(Citrus sinensis)
STRING	XP_006447662.1	1e-110	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2380	26	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-29	C3H family protein