PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_39787_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 119aa MW: 13537.7 Da PI: 10.3437

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_39787_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.6	4.3e-38	12	106	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++rrkC+k+C la+yfpa+qpk+f+n+h+lFG+s + k+l++++++++++am+s+++e+++ra+ Pv+G++g+i++l++ql+ + el Neem_39787_f_1 12 ACAVCKYQRRKCQKNCRLARYFPADQPKTFQNAHRLFGVSGIAKILNNVDDDKKDRAMASIIFESNIRAKYPVNGCLGLIFSLEKQLQAAVDELR 106 7**************************************************************************************99988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.555	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-36	12	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MTIKGEGGTK QACAVCKYQR RKCQKNCRLA RYFPADQPKT FQNAHRLFGV SGIAKILNNV 60 DDDKKDRAMA SIIFESNIRA KYPVNGCLGL IFSLEKQLQA AVDELRHEVS RKRMFGTHF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-24	8	111	7	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-24	8	111	7	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006482664.2	6e-53	LOB domain-containing protein 3-like
Swissprot	Q9STS6	6e-35	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A2H5P205	5e-52	A0A2H5P205_CITUN; Uncharacterized protein (Fragment)
STRING	XP_006482664.1	9e-53	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6303	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-37	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]