PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_39823_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 237aa    MW: 26727.7 Da    PI: 8.3941
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_39823_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.51e-06159217563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     kr++r   NR++A r  ++Kk ++  Le    +L+++ ++L+ +l  l+ e+++l +e+
  Neem_39823_f_1 159 KRAKRIVTNRLSAIRAKEKKKLYMYMLEHNLHSLQSKSTKLAARLTLLQTESKSLNAEN 217
                     9******************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-4155219IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.255157220IPR004827Basic-leucine zipper domain
PfamPF077165.6E-6157209IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.4E-6159209No hitNo description
SuperFamilySSF579598.26E-8159213No hitNo description
CDDcd147034.98E-16160209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDKGKKPIDD QQEEEDFLSL DADYYYYDPT MILSPAALAQ PEFSVILSEG SGSGKQPTLV  60
DEMEAAKEDF FTKFLNMNFA GQSSPKMNQQ DSMLTFSKAA DLQIFGADNK TPAPPVVPER  120
YTMPPQAPLP ASEANGKSIV FRKTMPPHVL AEVALYDPKR AKRIVTNRLS AIRAKEKKKL  180
YMYMLEHNLH SLQSKSTKLA ARLTLLQTES KSLNAENNIL RDRMHIMSKQ LHLQDCK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046668.18e-56probable transcription factor PosF21
TrEMBLA0A2H5PV101e-54A0A2H5PV10_CITUN; Uncharacterized protein
STRINGXP_006447900.14e-48(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2307833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31370.62e-25bZIP family protein