PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4000_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 229aa    MW: 26443.1 Da    PI: 5.0869
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4000_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-1358100754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Neem_4000_f_6  58 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 100
                    57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.33651100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1852115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.97E-1454105No hitNo description
Gene3DG3DSA:4.10.280.103.0E-1757116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-1158100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MENIGEEYSQ EYQNYWETKM FWRNEEFDTW AIDETFSGYY DSSSPDGAAS SVASKNIVSE  60
RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIDYIQEL HEQEKRIQDE IMELESGKTK  120
TNLGFDFEQE LPVLLRPKKK KIEQFYDSGG SRTSPVEVLE LRVNSMGEKT LVVSITCSKR  180
TDTMVKLCEA FEALKLKIIT ANITAVAGRL LKTAFIEVSF FSFYFPTYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1456100953Transcription factor MYC2
5gnj_B7e-1456100953Transcription factor MYC2
5gnj_E7e-1456100953Transcription factor MYC2
5gnj_F7e-1456100953Transcription factor MYC2
5gnj_G7e-1456100953Transcription factor MYC2
5gnj_I7e-1456100953Transcription factor MYC2
5gnj_M7e-1456100953Transcription factor MYC2
5gnj_N7e-1456100953Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453237.11e-143transcription factor bHLH35
RefseqXP_006474281.11e-143transcription factor bHLH35
SwissprotQ2HIV97e-82BH035_ARATH; Transcription factor bHLH35
TrEMBLV4UV051e-142V4UV05_9ROSI; Uncharacterized protein
STRINGXP_006453236.11e-143(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.28e-87bHLH family protein