PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_40102_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 248aa    MW: 26719.9 Da    PI: 9.1059
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_40102_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof58.41.5e-181313262
          zf-Dof 32 fCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    fCk+CrryWtkGGalrnvP+Ggg+rknk+ss
  Neem_40102_f_2  1 FCKTCRRYWTKGGALRNVPIGGGCRKNKNSS 31
                    9***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-8125IPR003851Zinc finger, Dof-type
PfamPF027011.1E-12129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088416.032129IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
FCKTCRRYWT KGGALRNVPI GGGCRKNKNS SMSAIKSSSA AKMKTVAYEF GRSSGHGNGF  60
DHEFSSTPTM WTSPQNSPLL ALLRTTQNPN INPLYLSNSV RVKEEAAVLG THVIKAEPAE  120
PVVATGALNS GTVVLDPLNQ VPSLGLCSPL WKNNQLHAQQ YYQQNGFLVG HEVQNSGMQE  180
LYQRLKSSTN YYADHSTSTV VLSNAGSSAS TSTSTILESA PFAGGELGFW NPAFSWSDHL  240
PTTNGAYP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039230.11e-107PREDICTED: dof zinc finger protein DOF1.1-like isoform X1
RefseqXP_011039231.11e-107PREDICTED: dof zinc finger protein DOF1.1-like isoform X2
TrEMBLA0A2C9URH61e-103A0A2C9URH6_MANES; Uncharacterized protein
TrEMBLA0A3N7FCG51e-104A0A3N7FCG5_POPTR; Uncharacterized protein
STRINGcassava4.1_024126m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16000915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-12DNA binding with one finger 2.4