PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_40119_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 241aa MW: 26314.2 Da PI: 4.3522

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_40119_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.1	3e-11	14	44	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT+eEd++lv++++++G g+W++ ++ Neem_40119_f_1 14 KGPWTPEEDQKLVQYIQKHGHGSWRALPKLA 44 79***********************998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.4E-14	5	45	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.779	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.23E-9	11	43	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-9	14	42	IPR001005	SANT/Myb domain
CDD	cd00167	6.43E-7	16	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLVQYIQ KHGHGSWRAL PKLAALANLK DLLENQQIDE 60 QAVRLQAEAV QLAKLQYLQY FLQSAASINT THYGQNGITE MDALNLLNSI PSSIKENPVL 120 NSSQTENPDS FSQLGIESSQ PLHYPGLLSH FPDPQVPISF QTPLNSEMGQ CSNNYTMVSQ 180 GANPPDSSWI LPSPPAVHPS VTDTTSISNP GDASSTSSYG GGTSSYWPEL FLEDPIMQEI 240 S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006473009.1	5e-88	transcription factor MYB93
Swissprot	Q9S9Z2	9e-24	MYB93_ARATH; Transcription factor MYB93
TrEMBL	B9RJK2	1e-102	B9RJK2_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002513921.1	1e-103	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-21	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]