PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_40430_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 192aa    MW: 22066.8 Da    PI: 8.2054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_40430_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-1499150255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +  hn+ Er RR+++N  ++ Lr+llP+a   + kKls  ++  ++v+Y+ +Lq
  Neem_40430_f_1  99 KLYHNASERDRRKKMNGLYSALRSLLPHA--DQTKKLSIPATISRVVKYLPELQ 150
                     567*************************6..48888**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.01197149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1498156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1198153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-1298154No hitNo description
PfamPF000102.8E-1199150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10103155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MCALTPPTFA NFGWPSKEYP ITYHHHQLQQ QEEDYYSYRE TTDQDQQYLI SQPQIRLDRS  60
ASFSANTGND AVVISQPQIR LDRSASFSAN TGNDAVVKKL YHNASERDRR KKMNGLYSAL  120
RSLLPHADQT KKLSIPATIS RVVKYLPELQ QQAERAHGLD CEVITDKLKS LYEKREEGML  180
FPSNFNLDVK IN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006494391.24e-36transcription factor ORG2
TrEMBLA0A067DMC31e-34A0A067DMC3_CITSI; Uncharacterized protein
TrEMBLA0A2H5QLA51e-34A0A2H5QLA5_CITUN; Uncharacterized protein
TrEMBLV4SBL61e-35V4SBL6_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006421111.12e-36(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-32bHLH family protein