PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_40557_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 169aa    MW: 19402.5 Da    PI: 10.9494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_40557_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-081258254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    rr  n++E++RR ++++ + +L +l+ ++      Kls  e + +A+ YI +L
  Neem_40557_f_1 12 RR--NINEKNRRTEMRDLLLKLASLIRPQ----PSKLSVPELVDRATSYIMQL 58
                    44..9*********************995....38****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-10773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.782858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-81277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-61358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-41464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MARRTSSAST ARRNINEKNR RTEMRDLLLK LASLIRPQPS KLSVPELVDR ATSYIMQLRK  60
NKESLKRRRE LLRGDHATSN SSSSRMLPIM NLTTMDSILE VNLICGLTNR NFMLHEIISV  120
LEDEGAEVID ATQRHTGDRI IYIIKSKAII SRIGFETSRV QERLQDLIL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046481.11e-59transcription factor bHLH167
TrEMBLA0A2H5PEV77e-59A0A2H5PEV7_CITUN; Uncharacterized protein
TrEMBLV4UBF67e-59V4UBF6_9ROSI; Uncharacterized protein
STRINGXP_006446341.11e-59(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.17e-26bHLH family protein