PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_4117_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 379aa MW: 41894.5 Da PI: 6.6375

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_4117_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.2e-07	107	154	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RR+r+N+ f eL l ++ +K++Ka+iL +++ +++L Neem_4117_f_1 107 IQKADREKLRRERLNEQFLELGNTLDPD----RPKNDKATILMDTIQMLNDL 154 56789******************997....79**********999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.9E-10	102	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.13E-12	102	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.32E-5	102	158	No hit	No description
PROSITE profile	PS50888	12.538	104	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-5	107	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-4	110	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MSKNYAVICE NVNFREMEVI TLVMIGFRFR VTRQRSGTLT GLIHGADESA ALSGKGTLIN 60 NIRETDNETS ESVVADAGPS TSNSPLQNTK PDQRQKQGME VKDSRKIQKA DREKLRRERL 120 NEQFLELGNT LDPDRPKNDK ATILMDTIQM LNDLTAEVNR LRAECAALSE ESCELMQERN 180 ELKEEKTSLK SDIESLNVQY QQRLRIMFPW GGLHPSVITA PPYSYPVSVP LPSGSIPMHP 240 SLHPLPFGNQ NPGAIPNPSS TFIQYSTATS PPVEQLSSQY ASSSHVSSKP DSRNKSLDYQ 300 NGNNVERSVD SDDVATELEL KMPGSSTQQD TSSGERKGKQ TQKKERSITN GSSSSRFSSS 360 HCHQDSSSNS VGDVSKSNK

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MSKNYAVICE NVNFREMEVI TLVMIGFRFR VTRQRSGTLT GLIHGADESA ALSGKGTLIN  60
NIRETDNETS ESVVADAGPS TSNSPLQNTK PDQRQKQGME VKDSRKIQKA DREKLRRERL  120
NEQFLELGNT LDPDRPKNDK ATILMDTIQM LNDLTAEVNR LRAECAALSE ESCELMQERN  180
ELKEEKTSLK SDIESLNVQY QQRLRIMFPW GGLHPSVITA PPYSYPVSVP LPSGSIPMHP  240
SLHPLPFGNQ NPGAIPNPSS TFIQYSTATS PPVEQLSSQY ASSSHVSSKP DSRNKSLDYQ  300
NGNNVERSVD SDDVATELEL KMPGSSTQQD TSSGERKGKQ TQKKERSITN GSSSSRFSSS  360
HCHQDSSSNS VGDVSKSNK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021274836.1	1e-142	transcription factor bHLH121 isoform X2
Refseq	XP_021274839.1	1e-142	transcription factor bHLH121 isoform X4
Swissprot	Q9LT23	2e-68	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A498KGZ8	1e-139	A0A498KGZ8_MALDO; Uncharacterized protein
STRING	XP_008336910.1	1e-138	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	2e-57	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]