PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4121_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 284aa    MW: 31579 Da    PI: 5.818
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4121_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.5e-11147194552
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                    kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++  l
  Neem_4121_f_1 147 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 194
                    8999*********************************99998776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-14143207IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.714145208IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-11147201No hitNo description
PfamPF001706.2E-10147191IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-12147199No hitNo description
CDDcd147032.19E-23148198No hitNo description
PROSITE patternPS000360150165IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTINGPNNQP SWVDEFLDFS SVRRGAHRRS ISDSIAFLDP PSLVEDCRNS NAINSMPETN  60
GFDRLDDEQL MSMFSDDISV AVPLTASSSN PSTPSDQNSN NDEKTTPLDQ QQQPKNEPGE  120
VESSCKNGPQ TTQPPPASNS DTVIDPKRVK RILANRQSAQ RSRVRKLQYI SELERSVTTL  180
QTEVSALSPR VAFLDHQRLV LNVDNSALKQ RIAALAQDKI FKDAHQDALK KEIERLRQVY  240
RQQNLKKMNN NNNAAPPLAS AAPTQQPMNT DAIGCTDKDQ QLLS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007021637.21e-140PREDICTED: basic leucine zipper 34
SwissprotQ9M2K42e-99BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A061F9231e-138A0A061F923_THECC; Basic-leucine zipper transcription factor family protein
STRINGEOY131621e-139(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-100bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]