PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4123_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 736aa    MW: 84346.3 Da    PI: 6.4571
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4123_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-08531570345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT+eE el  + ++++G++ Wk+ a+ +g  + + ++k+ w+
    Neem_4123_f_1 531 KWTPEELELVRKFHEKHGSD-WKRLAHALG--KHRFHVKDAWR 570
                      8*******************.********9..56677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.961451524IPR017877Myb-like domain
SMARTSM007170.0021455526IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-6458545IPR009057Homeodomain-like
SMARTSM007170.022528575IPR001005SANT/Myb domain
SuperFamilySSF466895.79E-9529590IPR009057Homeodomain-like
CDDcd001670.00347531560No hitNo description
PROSITE profilePS500906.632531573IPR017877Myb-like domain
PfamPF139212.5E-11532590No hitNo description
Gene3DG3DSA:1.10.10.602.2E-9546583IPR009057Homeodomain-like
PROSITE profilePS500907.956574642IPR017877Myb-like domain
SMARTSM007172.5578644IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-7584643IPR009057Homeodomain-like
PROSITE profilePS500907.027644697IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MGKKTTGKKG HEREKNNTFE EVINGENGLP TSVEDDVEYR DTQIEAVIEC GGDVNEKKKT  60
FKNGDSVDLS ASETEVVRKD DVDEEEKRKK IKQENGFGGN DAGLSVSHVE TVVKDNREKK  120
ENTKLQEVSG NGAEFSVNQT EAVLDRDLHA SKKKSKKKQE SSSNDFESSA SRKEAFMVDN  180
VDINNGNEKD RKDKKRKLEI NEYEHETQKP EKKDKRINSA DAVSKVKKDS KQEHLGLEEN  240
NSLQKNDQVN SGNIAELNER KKSKTRHKEA NNNHAADIIS SLNDIAEDNL TGKVVRDLRD  300
SEQDIAEVMN GKEDVEAGRE KEQLEKVENQ RKEKNRKRKE HDDDAQAEEL HNANREVENI  360
VDNESTGHSS RNEAGNRKME GDAVHKEDGK KKKKKAKSVR KSPRTKKGFE ATDPSENSTV  420
TERSKKVSFS DKVQVFPSSD GSSNDKNAED DELVRGKRFS VEEDEMIRKS VTNYIETRGL  480
GEEGLNMVLH CRSHSEVKNC WKEIGAALPW RPSESIYYRA HILFERDENR KWTPEELELV  540
RKFHEKHGSD WKRLAHALGK HRFHVKDAWR RIRLPNQKKG QWSQEEYQKL FDLVNLDLRM  600
KASEEKKSKH GMLRDNISWE AISDKLETRS NAICCMKWYD QLTSPMVAEG KWADTDDYGL  660
VNALSALDAC CMDDVDWDNL LEHRSGTICQ KRWNQMAKHL GPDANKSFPE QVEILSTRYS  720
LDVLEAREAY NSQQQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190197RKDKKRKL
2329336QRKEKNRK
3330339RKEKNRKRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488047.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A2H5Q5340.0A0A2H5Q534_CITUN; Uncharacterized protein
STRINGXP_006488047.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-129MYB_related family protein