PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_41328_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 173aa MW: 19386.8 Da PI: 10.2691

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_41328_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.1	3e-16	85	144	1	60
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +ke kr +r+ +NR++A+ R+RKka++ eLe++vk Le++N++L ++l++l++e + l+ Neem_41328_f_1 85 DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLEKKNSELEERLSTLQNENQMLR 144 5899***************************************************99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00041	4.7E-5	84	100	IPR001630	cAMP response element binding (CREB) protein
SMART	SM00338	6.2E-14	85	149	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-14	86	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.61	87	144	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-16	89	146	No hit	No description
SuperFamily	SSF57959	2.88E-13	89	145	No hit	No description
CDD	cd14704	6.13E-19	90	141	No hit	No description
PROSITE pattern	PS00036	0	92	107	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	4.7E-5	102	122	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	4.7E-5	122	139	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MQEQVTSSIA ASSLPSSSER SSSSALQLEV KEGVESDEEI RRVPEIGGEP AGTSASGRDG 60 GSTAGPDRVQ PSGEGQRKRG RSPADKENKR LKRLLRNRVS AQQARERKKA YLNELETRVK 120 DLEKKNSELE ERLSTLQNEN QMLRHLHHPI TMPSFAFAWA LWALKFLPYL FTK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2oqq_A	5e-15	110	146	3	39	Transcription factor HY5
2oqq_B	5e-15	110	146	3	39	Transcription factor HY5
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY176679	1e-39	AY176679.1 Brassica rapa subsp. pekinensis HY5 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015868446.1	8e-80	transcription factor HY5-like isoform X2
Refseq	XP_015885857.1	8e-80	transcription factor HY5
Swissprot	Q9SM50	2e-65	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A2H5NY71	2e-76	A0A2H5NY71_CITUN; Uncharacterized protein
TrEMBL	V4UHN0	2e-76	V4UHN0_9ROSI; Uncharacterized protein
STRING	XP_006483336.1	3e-77	(Citrus sinensis)
STRING	XP_006450470.1	3e-77	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5691	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	6e-53	bZIP family protein

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]