PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_41406_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MIKC_MADS
Protein Properties Length: 114aa    MW: 13287.4 Da    PI: 10.4738
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_41406_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.91.3e-231059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien snr+vt+skRrng++KKA+E+ vL da+v+++i +s+gk++ey+s
  Neem_41406_f_1 10 RIENLSNRKVTYSKRRNGLIKKAKEIAVLYDAKVSLMIHASSGKMHEYCS 59
                    8***********************************************96 PP
2K-box39.32.8e-1469114146
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesL 46 
                     y+k+sgk+l++ak+e l++e++++k++++++q ++Rhl+Ged++ L
  Neem_41406_f_1  69 YHKQSGKKLWDAKHEDLSNEIERIKRKNDSMQIKLRHLKGEDISHL 114
                     899****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.09161IPR002100Transcription factor, MADS-box
CDDcd002652.02E-32278No hitNo description
SuperFamilySSF554554.58E-32293IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-24323IPR002100Transcription factor, MADS-box
PfamPF003198.1E-191057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-243859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-680114IPR002487Transcription factor, K-box
PROSITE profilePS512978.22682114IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MGRGKIEIRR IENLSNRKVT YSKRRNGLIK KAKEIAVLYD AKVSLMIHAS SGKMHEYCSS  60
NLVEILDSYH KQSGKKLWDA KHEDLSNEIE RIKRKNDSMQ IKLRHLKGED ISHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-16195191MEF2 CHIMERA
6bz1_B3e-16195191MEF2 CHIMERA
6bz1_C3e-16195191MEF2 CHIMERA
6bz1_D3e-16195191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434290.19e-61floral homeotic protein FBP1 isoform X1
RefseqXP_006472853.19e-61floral homeotic protein GLOBOSA isoform X1
RefseqXP_024040054.17e-61floral homeotic protein GLOBOSA isoform X2
RefseqXP_024951790.16e-61floral homeotic protein GLOBOSA isoform X2
SwissprotQ0HA253e-59MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A067GP562e-59A0A067GP56_CITSI; Uncharacterized protein
TrEMBLA0A2H5PI912e-60A0A2H5PI91_CITUN; Uncharacterized protein
TrEMBLV4T7S62e-59V4T7S6_9ROSI; Uncharacterized protein
STRINGXP_006472853.13e-60(Citrus sinensis)
STRINGXP_006434290.14e-60(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]