PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_41482_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 153aa    MW: 17770 Da    PI: 6.9601
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_41482_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.2e-11127153935
                     CHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   9 rkqkNReAArrsRqRKkaeieeLeekv 35 
                     r+ +NRe+ArrsR+RK+a + eLe+ v
  Neem_41482_f_1 127 RMLSNRESARRSRRRKQAHLTELETQV 153
                     9***********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579592.33E-7126153No hitNo description
PROSITE patternPS000360127141IPR004827Basic-leucine zipper domain
PfamPF001702.8E-8127153IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-7127153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MLELYAYKWY ISILFDPAVW TGMLELYAYK WYISILFDPA GAVHDLSRSQ DKDANGLHGT  60
PFISASLKKT EVPVRSINSG SSREQSEDEE ADGETATTEN MDPADAKRVR RCWELVDHKL  120
RTYVIWRMLS NRESARRSRR RKQAHLTELE TQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135142RRSRRRKQ
2137142SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432930.19e-34light-inducible protein CPRF2
RefseqXP_006471677.29e-34light-inducible protein CPRF2
SwissprotQ990902e-13CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A2H5NXA14e-34A0A2H5NXA1_CITUN; Uncharacterized protein
STRINGXP_006471677.13e-33(Citrus sinensis)
STRINGXP_006432930.14e-33(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]