PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_41578_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 156aa    MW: 18628.1 Da    PI: 10.3578
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_41578_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.2e-101975561
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61
                    k+ +r+q+NRe+A+rsR++++++++ L +++++L+++  +   + + +++  ++lk 
  Neem_41578_f_2 19 KKRKRMQSNRESAKRSRLKREQRVKDLVNEIQTLKEQILEFNRQYNDMTQRTQTLKE 75
                    899********************************9987777777777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-81579IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-91779No hitNo description
PROSITE profilePS5021710.6221780IPR004827Basic-leucine zipper domain
PfamPF001701.5E-81977IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.41E-91977No hitNo description
CDDcd147025.92E-102071No hitNo description
PROSITE patternPS0003602237IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MSSCSRKTSE LEAAIMDEKK RKRMQSNRES AKRSRLKREQ RVKDLVNEIQ TLKEQILEFN  60
RQYNDMTQRT QTLKEQILEF NRQYNDMTQR THNLSSENES LNLEKAKLGE YLNSLYSVYV  120
RFTHQMSQTT GCLSKQKTWE VRNQMRPFIT TGMSKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419404.12e-43bZIP transcription factor 53
TrEMBLA0A2H5N7W64e-42A0A2H5N7W6_CITUN; Uncharacterized protein
TrEMBLV4U0924e-42V4U092_9ROSI; Uncharacterized protein
STRINGXP_006419404.17e-43(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30362763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.17e-13basic region/leucine zipper motif 53