PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_4164_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 163aa MW: 18409 Da PI: 8.9404

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_4164_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	96	4.4e-30	46	134	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y+eYA++vGFs+r+ +s+ks+r+g+i++r++ C+keg++ +++k+ + + r+r++ r gCka++ vkkek g+w+vtk++ eHnH+l+ Neem_4164_f_1 46 LYDEYARRVGFSTRIVSSRKSERDGSIISRRLACNKEGFNVNRQKSGRVQIRKRESIREGCKAMILVKKEKPGRWVVTKFVREHNHPLV 134 6*******************************************99999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-27	46	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MEIIVEDQTV ITESPTGGES GVCEVDASHE PYEGMLFESE EAAKALYDEY ARRVGFSTRI 60 VSSRKSERDG SIISRRLACN KEGFNVNRQK SGRVQIRKRE SIREGCKAMI LVKKEKPGRW 120 VVTKFVREHN HPLVISSEKV QPAPLTGICK GWRSEAKTLL EKD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003632074.2	2e-79	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	8e-27	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1Q3CZN8	3e-78	A0A1Q3CZN8_CEPFO; FAR1 domain-containing protein
TrEMBL	A0A438I5G4	2e-78	A0A438I5G4_VITVI; Protein FAR1-related sequence 5
STRING	VIT_05s0102g00390.t01	9e-79	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19294	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-43	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]