PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_41784_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 161aa MW: 18108.9 Da PI: 8.4877

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_41784_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.6	7.7e-27	47	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+ Neem_41784_f_1 47 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKDHNHPLV 135 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-24	47	135	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MVVVDSDEGT GGVESSAGRE LGMFEGDSII EPCEGMEFES EDAAKIFYDE YARRVGFVMR 60 VMSCRRSERD GRILARRLGC NKEGYCVSIR GKFGPVRKPR PSTREGCKAM IHVKFDKSGK 120 WVITKFVKDH NHPLVVAPRE ARQTMAFLSI ICGLYPGCFW S

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443015.1	1e-93	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_024043383.1	1e-93	protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_024955241.1	1e-93	protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	3e-27	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2H5QMM3	2e-92	A0A2H5QMM3_CITUN; Uncharacterized protein
STRING	XP_006478773.1	4e-91	(Citrus sinensis)
STRING	XP_006443015.1	5e-93	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-74	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]