PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_41919_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LSD
Protein Properties Length: 136aa    MW: 14067.5 Da    PI: 7.9168
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_41919_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.41.1e-132852125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP GA+sV+Ca+C++V
  Neem_41919_f_1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
                    ************************9 PP
2zf-LSD146.94.3e-156791125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+tV
  Neem_41919_f_1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                    ************************9 PP
3zf-LSD1421.5e-13105129125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C++V
  Neem_41919_f_1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                     ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.107.2E-423126No hitNo description
TIGRFAMsTIGR010538.8E-132555IPR005735Zinc finger, LSD1-type
SuperFamilySSF486954.74E-528126IPR011031Multihaem cytochrome
PfamPF069431.3E-102852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.8E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.1E-12102130IPR005735Zinc finger, LSD1-type
PfamPF069439.2E-13105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MPVPLAPYPS PPAPYTPPAN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT GVGVST
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021827383.12e-91protein LOL1
RefseqXP_021827384.12e-91protein LOL1
RefseqXP_021827385.12e-91protein LOL1
SwissprotQ93ZB12e-76LOL1_ARATH; Protein LOL1
TrEMBLA0A314UNX35e-90A0A314UNX3_PRUYE; Protein LOL1
TrEMBLA0A314YTU15e-90A0A314YTU1_PRUYE; Protein LOL1
TrEMBLM5WNS85e-90M5WNS8_PRUPE; Uncharacterized protein
STRINGEMJ109439e-91(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-62lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]