PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_4191_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NF-YB

Protein Properties

Length: 182aa MW: 19310.1 Da PI: 6.262

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_4191_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	93.1	2.7e-29	24	82	39	97
NF-YB 39 vsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 e sf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl+kyre+egek Neem_4191_f_1 24 CKEQDSFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEK 82 56778****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00615	4.0E-14	20	38	No hit	No description
Pfam	PF00808	4.1E-7	24	56	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.9E-27	26	95	IPR009072	Histone-fold
SuperFamily	SSF47113	8.59E-21	29	93	IPR009072	Histone-fold
PRINTS	PR00615	4.0E-14	39	57	No hit	No description
PRINTS	PR00615	4.0E-14	58	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MTGKRNQTSP VGSPSSGNMS DSSCKEQDSF ITGEASDKCQ REKRKTINGD DLLWAMTTLG 60 FENYVGPLKI YLNKYRETEG EKNSMARQED QNQAAAGIAE MNRINRSFSA AKTDFHNFNM 120 GFYSLGTQGF PNGTVGGVGV GGGGGYGENL GGGGYNMSRI HENGDGNGGR AAAGMAAHGV 180 DW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-21	29	77	44	92	Transcription factor HapC (Eurofung)
4g92_B	1e-21	29	77	44	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006493850.1	2e-78	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024037043.1	2e-78	nuclear transcription factor Y subunit B-3
TrEMBL	A0A067F1F4	2e-77	A0A067F1F4_CITSI; Uncharacterized protein
STRING	XP_006493850.1	8e-78	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	7e-33	nuclear factor Y, subunit B3