PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_42098_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 237aa MW: 26210.6 Da PI: 9.4568

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_42098_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.5	7.7e-10	15	60	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l Neem_42098_f_1 15 KRAKRILANRQSAARSKERKARYMLELERKVQTLQTEATTLSAQLT 60 9****************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.4E-16	11	75	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	13	76	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.48E-10	15	66	No hit	No description
Pfam	PF00170	2.5E-8	15	60	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.5E-10	15	69	No hit	No description
CDD	cd14703	3.98E-21	16	65	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MPPDKLAELW MVDPKRAKRI LANRQSAARS KERKARYMLE LERKVQTLQT EATTLSAQLT 60 LFQRDTTGLS AENTELKLRL QAMEQQAQLR DALNEALKKE VERLKIATGE IVNPSESFNM 120 GIHPMPYNHS NVFAVLQQSF NMGIHPMPYN HSNVFAVLQQ PAGAPTGHQN MQLSALSHSQ 180 SSTAAHHLQQ TSSQPASDVS KNDEVGRLQG LDISSKVSSF VKSEGPSLSA SESSTTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108472.1	1e-113	transcription factor RF2b
Swissprot	O22873	2e-71	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	W9SAC2	1e-111	W9SAC2_9ROSA; Transcription factor RF2b
STRING	XP_010108472.1	1e-112	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	8e-72	basic leucine-zipper 52

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]