PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4261_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 173aa    MW: 19551.3 Da    PI: 10.5794
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4261_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.7e-1088133247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT++E+  l+ + k lG+g+Wk I + +   Rt+ q+ s  qky
    Neem_4261_f_3  88 KPWTEDEHRVLLSGLKSLGKGDWKGILKNFVASRTPTQVSSNAQKY 133
                      58*****************************9*******9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.614722IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:1.10.10.603.2E-1081134IPR009057Homeodomain-like
PROSITE profilePS5129414.98982138IPR017930Myb domain
SuperFamilySSF466897.59E-1484139IPR009057Homeodomain-like
SMARTSM007177.7E-686136IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.6E-1387137IPR006447Myb domain, plants
PfamPF002497.4E-888133IPR001005SANT/Myb domain
CDDcd001671.39E-689126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVKETIRKCS QCGHNGHNSR TCNGLFGVNI SGRIQDHSIM KKSVSLGSLQ SLAVADKLNA  60
HIDDEGYLSD GPIHYKRNKA AHERRKGKPW TEDEHRVLLS GLKSLGKGDW KGILKNFVAS  120
RTPTQVSSNA QKYFLRQAST YKKNRRTSLF DMPFKEPTVN LSLALFLNYR PYT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043898.13e-68probable transcription factor At5g61620
SwissprotQ9FKF91e-55M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A1R3G2K74e-67A0A1R3G2K7_9ROSI; Uncharacterized protein
STRINGXP_006490065.15e-66(Citrus sinensis)
STRINGXP_004309020.18e-66(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-51MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]