PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_42650_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 210aa    MW: 24180.8 Da    PI: 10.3919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_42650_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-131160255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r   n+ E++RR+++++ +++L +l+P++   p   ls   iL kA  YI +Lq
  Neem_42650_f_1 11 RIHRNMTEKNRRKQMKDLIAKLASLIPPQ---P-SQLSVTKILDKARSYIMQLQ 60
                    6778************************6...3.67*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-13666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-9761No hitNo description
Gene3DG3DSA:4.10.280.101.5E-11971IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.592959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-101160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-91565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAGLGSSSSS RIHRNMTEKN RRKQMKDLIA KLASLIPPQP SQLSVTKILD KARSYIMQLQ  60
KNHEESLKKR KALLEGDRGQ ERYNLTAESS SSSSSRLMLP IMNITSSDST LEVNLICGLM  120
NRNFMLHEII NVLEEEGTEV IDATQINAGE RVIYIIKSKW MLQPTRLPNL QKLGHHFQNW  180
YRNFEGSRTT RRTSFLKSSM AYIFIHDSFY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723EKNRRKQ
21823KNRRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046481.11e-44transcription factor bHLH167
TrEMBLA0A2H5PEV73e-43A0A2H5PEV7_CITUN; Uncharacterized protein
TrEMBLA0A2H5PEV91e-42A0A2H5PEV9_CITUN; Uncharacterized protein
TrEMBLA0A2H5PEY11e-42A0A2H5PEY1_CITUN; Uncharacterized protein
TrEMBLV4UBF63e-43V4UBF6_9ROSI; Uncharacterized protein
STRINGXP_006446341.15e-44(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.15e-26bHLH family protein