PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_42776_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 389aa    MW: 43619.5 Da    PI: 6.0235
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_42776_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30224282259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Neem_42776_f_1 224 NDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 282
                     8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-32208284IPR003657WRKY domain
SuperFamilySSF1182909.81E-28217284IPR003657WRKY domain
PROSITE profilePS5081129.149218284IPR003657WRKY domain
SMARTSM007749.8E-38223283IPR003657WRKY domain
PfamPF031062.7E-27224282IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDQRNRNNRR EEISGMDIDL SLKIDSKEQQ EEKADEQAAA IVTTEEEEEE DLQENCSKKT  60
EELCSLQKEM NRMKEENKLL RKVVEQTTKD YYDLQMKLSV IQQNSPQKDT QIFLSLHGNE  120
RDDHLQEPKI MAPNFIDLIN QSSPSKENEL GLSLKLQTER EEDKGEINKE DVTTASFTRY  180
LSQNRQKQQL QPSEFSAITS HVSSPPNRKA RVSVRARCQA ATLNDGCQWR KYGQKIAKGN  240
PCPRAYYRCT VAPGCPVRKQ VQRCLEDMSI LITTYEGTHN HPLPVGATAM ASTAASTAAA  300
ASFMLLDSSY NPNDFIRGSS SSDHLHYQNA QVNSFSHSSS LRNINPNNDP LNGNIVLDLT  360
ATPLDHQKLL FPAAAVASSS HSSAQPGFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-23210286176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024948583.11e-123probable WRKY transcription factor 9
SwissprotQ9C9F09e-78WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLV4SWA91e-127V4SWA9_9ROSI; Uncharacterized protein
STRINGXP_006428226.11e-128(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.14e-72WRKY DNA-binding protein 9