PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_4299_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 223aa MW: 25077.3 Da PI: 9.1461

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_4299_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.7e-10	60	110	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++h +E++RR+++ + + Lr+llP ++K s ++ Av+Y+k+L Neem_4299_f_4 60 KMTHRDIEKQRRQEMSTLHASLRSLLPLeY---IKGKRSMSDHMNGAVNYVKDL 110 789***********************77...*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-12	58	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.976	58	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.52E-9	58	115	No hit	No description
Pfam	PF00010	1.6E-7	60	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-10	60	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MAGEQLSSNP SQQNIIRQNR VLAHNSMDDS SHNKSTRQSQ WRNLSVSGNN ENTSNNHKNK 60 MTHRDIEKQR RQEMSTLHAS LRSLLPLEYI KGKRSMSDHM NGAVNYVKDL KNKIEELNGK 120 RDELKKQSDL SVSDDGTGSS NTTLPSHVLI HPCLGGLEVV ISSSFREQVF PVSRVLEVLL 180 KEGLDVVSCV STKVNQMLLL TIHIEPPTES SRSDSMIVYT MPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024948035.1	2e-70	transcription factor bHLH120-like
TrEMBL	V4S852	6e-69	V4S852_9ROSI; Uncharacterized protein
STRING	XP_006490458.1	1e-69	(Citrus sinensis)
STRING	XP_006421795.1	1e-69	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	6e-45	bHLH family protein