PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_4369_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

DBB

Protein Properties

Length: 250aa MW: 27981.6 Da PI: 7.3012

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_4369_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.5	1.1e-07	5	34	6	35
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++++e++ fC ++ lC C H+ Neem_4369_f_1 5 CDVCDKEEASVFCSADEAALCVACDRRVHH 34 *************************99974 PP
2	zf-B_box	31.7	3.2e-10	55	96	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C++++e ++ lfC++++ lC++C l +H++ H+ Neem_4369_f_1 55 SPLCDTCKERRALLFCQEDRAILCRECDLPIHRSneytkkHN 96 689*****************************8766666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.978	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.2E-8	4	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.42E-7	5	47	No hit	No description
Pfam	PF00643	1.2E-5	5	34	IPR000315	B-box-type zinc finger
SMART	SM00336	5.1E-14	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.708	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.6E-8	55	96	IPR000315	B-box-type zinc finger
CDD	cd00021	1.59E-10	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MKIWCDVCDK EEASVFCSAD EAALCVACDR RVHHANKLAS KHLRFSLVNP TFKDSPLCDT 60 CKERRALLFC QEDRAILCRE CDLPIHRSNE YTKKHNRFLL TGVKLSPSSC VYNPSPSSST 120 CGDATIIDGQ KRIRSSYSSV TKAKDFLDPS SSATTDNVFC KTYDQFLPFG NQDLEGNMGL 180 VSSEDLANWV PEVPPQSPQI PLHSSQNWFL NGFKESTEAK SLKVGRKWSE DGFTVPQISS 240 PPVQKTGNFW

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269\|PubMed:22535582}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024035077.1	1e-85	LOW QUALITY PROTEIN: B-box zinc finger protein 20
Swissprot	Q0IGM7	1e-61	BBX20_ARATH; B-box zinc finger protein 20
TrEMBL	A0A2N9GXM4	1e-84	A0A2N9GXM4_FAGSY; Uncharacterized protein
STRING	XP_006487328.1	2e-84	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6597	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	4e-62	DBB family protein

Publications ? help Back to Top
Wei CQ, et al. The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. J Genet Genomics, 2016. 43(9): p. 555-563 [PMID:27523280] Thussagunpanit J, et al. Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin. Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301 [PMID:27858514]