PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4507_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 675aa    MW: 74637.3 Da    PI: 8.7148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4507_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.21.1e-16345391455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Neem_4507_f_4 345 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 391
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-20338403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-17344395No hitNo description
PfamPF000105.3E-14345391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-20345399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MNPCMPDWNF EGDLPVSNQM KSTGTDHELV ELLWRNGQVV LQSQTHRKPT LNPTEPRQVQ  60
KQTIRGNSSS YGNSSNLIQN DETVSWIQYP IEDSLEKEFY SNFFSDLPPS GPMEVDKHAR  120
QLEGEKSVKF DVPGVVTSLQ HSNDNRSAVP GLQRSTMPPP RFEFHDAAQQ NKSLGDLGKV  180
VNFPQSTAAL KGELGSGKGQ IDRKVSGNLP QGEVRECSMM TVGSSHCGSN QVAYDIDMSR  240
ASSNGVGSTG LSPGNLKDDV RKVITQSDRG KTETLEPTVT SSSGGSGSSF NRTSKQSTGD  300
NSLKRKNRDA GESECQSEAA EFESAGGNRT AQRSGSSRRS RAAEVHNLSE RRRRDRINEK  360
MRALQELIPH CNKTDKASML DEAIEYLKSL QLQLQVMWMG SGMAPVMFPG VQHYVSRMGM  420
GMGPPSLPSI TNTMHLPRVP LVDQSMSMAQ AQNQAVMCQT PVLNPVNYQN QMQNSNFSDQ  480
YARYMGFHPM QTTSQPMNMF RFGSPTMQSQ IVSQPSSTCG PFPGGAASDN APLSGKTGRL  540
HLSSQMVMLL FVGQVEDQLL KIAYLAAVSV TFIFIILDGF ILIRTLSRFA VLTLIWSLRS  600
YWPKILAPSL PYSLFHTHRS TMTVNNINCE IHSHALKVQL KATATRHQLL CINHTANSKS  660
CDHPLLRKDF CPQDR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349354ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042297.10.0transcription factor PIF4 isoform X2
TrEMBLV4TKJ10.0V4TKJ1_9ROSI; Uncharacterized protein
STRINGXP_006437070.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.48e-45phytochrome interacting factor 3-like 6