PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_450_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

M-type_MADS

Protein Properties

Length: 384aa MW: 43251.6 Da PI: 6.5991

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_450_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.5	8.4e-24	31	75	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e+++nrqvt+skRrngilKKA ELS+LCd+++ +++fs++g+ Neem_450_f_2 31 KRLESTTNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPNGR 75 689****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.932	23	83	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-32	23	82	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-26	24	110	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-20	25	45	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.4E-21	33	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-20	45	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-20	60	81	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MENSRHLLGY RSTKDCANLI CRMGRVKLKI KRLESTTNRQ VTYSKRRNGI LKKARELSIL 60 CDIDIVLLMF SPNGRPTLFH GSRSNIEEVI ARFAQLTPQE RAKSTQTVEE LTNHVRILQA 120 QLTEAHQRLR YWNNPDNIDS VEHLRQMENS LRESISRISL HKENFGKQQF MSLEFTSQGG 180 MQLPLMMSGV QENQPLSWLP NNDGQNMLVP NEPNFLSQSQ RDMGCSEDTP IPGYSGLLAA 240 GKEIEVANSG QADNIRNGGS NLNELGTSAC LSLQLGEQYS YSPYSSLNLS DDKKLKPDVE 300 MNLQGNPAVY QVNGNFELPR PVYGNGHHDW ISASGPCGTT IFDENSYLQV RILSNCIYYT 360 LSNFSLFIIA TEHSSFDSLS SSFE

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MENSRHLLGY RSTKDCANLI CRMGRVKLKI KRLESTTNRQ VTYSKRRNGI LKKARELSIL  60
CDIDIVLLMF SPNGRPTLFH GSRSNIEEVI ARFAQLTPQE RAKSTQTVEE LTNHVRILQA  120
QLTEAHQRLR YWNNPDNIDS VEHLRQMENS LRESISRISL HKENFGKQQF MSLEFTSQGG  180
MQLPLMMSGV QENQPLSWLP NNDGQNMLVP NEPNFLSQSQ RDMGCSEDTP IPGYSGLLAA  240
GKEIEVANSG QADNIRNGGS NLNELGTSAC LSLQLGEQYS YSPYSSLNLS DDKKLKPDVE  300
MNLQGNPAVY QVNGNFELPR PVYGNGHHDW ISASGPCGTT IFDENSYLQV RILSNCIYYT  360
LSNFSLFIIA TEHSSFDSLS SSFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	5e-14	23	111	1	88	Myocyte-specific enhancer factor 2B
1tqe_Q	5e-14	23	111	1	88	Myocyte-specific enhancer factor 2B
1tqe_R	5e-14	23	111	1	88	Myocyte-specific enhancer factor 2B
1tqe_S	5e-14	23	111	1	88	Myocyte-specific enhancer factor 2B
6c9l_A	5e-14	23	111	1	88	Myocyte-specific enhancer factor 2B
6c9l_B	5e-14	23	111	1	88	Myocyte-specific enhancer factor 2B
6c9l_C	5e-14	23	111	1	88	Myocyte-specific enhancer factor 2B
6c9l_D	5e-14	23	111	1	88	Myocyte-specific enhancer factor 2B
6c9l_E	5e-14	23	111	1	88	Myocyte-specific enhancer factor 2B
6c9l_F	5e-14	23	111	1	88	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440615.1	0.0	agamous-like MADS-box protein AGL65
Refseq	XP_024044106.1	0.0	agamous-like MADS-box protein AGL65
Refseq	XP_024044107.1	0.0	agamous-like MADS-box protein AGL65
Refseq	XP_024044108.1	0.0	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	3e-79	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	V4TQ76	0.0	V4TQ76_9ROSI; Uncharacterized protein
STRING	XP_006477467.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	9e-77	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]