PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_4533_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

M-type_MADS

Protein Properties

Length: 127aa MW: 14145.5 Da PI: 8.6448

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_4533_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.2	5.9e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ Neem_4533_f_3 10 RIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.637	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.0E-39	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.29E-28	2	63	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.42E-39	2	61	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-30	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.1E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-30	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MGRGRVQLRR IENKISRQVT FSKRRAGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTD 60 SRSVPVLYFE LETLFNQQSL LCMLLGAWFL TKDPGALCCW GLLYFTLLGE EDNLPNVSSA 120 SGGLQPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	7e-20	1	70	1	71	MEF2C
5f28_B	7e-20	1	70	1	71	MEF2C
5f28_C	7e-20	1	70	1	71	MEF2C
5f28_D	7e-20	1	70	1	71	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430951.1	2e-35	truncated transcription factor CAULIFLOWER A
Refseq	XP_006482432.1	2e-35	truncated transcription factor CAULIFLOWER A
Refseq	XP_008230294.1	5e-35	PREDICTED: truncated transcription factor CAULIFLOWER A
Swissprot	D7SMN6	3e-35	FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBL	A0A2H5P1P7	5e-34	A0A2H5P1P7_CITUN; Uncharacterized protein
TrEMBL	V4T3U9	5e-34	V4T3U9_9ROSI; Uncharacterized protein
STRING	XP_006482431.1	8e-35	(Citrus sinensis)
STRING	POPTR_0012s05950.1	5e-35	(Populus trichocarpa)
STRING	POPTR_0017s13400.1	7e-35	(Populus trichocarpa)
STRING	XP_006430951.1	8e-35	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	2e-35	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]